PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G287400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LBD
Protein Properties Length: 232aa    MW: 25398.9 Da    PI: 7.4373
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G287400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.43.5e-312103197
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C+++C+l+p++     p++q +++ +++k+FG++ ++++++++pe++r+++++sl++eA+ r+ +Pv+Gavg+++++++++
  Aqcoe6G287400.1.p   2 SCNGCRVLRKGCSESCILRPCLqwiesPEAQGHATVFIAKFFGRAGLMSFISSVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHI 93 
                        6******************************************************************************************* PP

             DUF260  88 eqlkaelall 97 
                        +q+++e++l+
  Aqcoe6G287400.1.p  94 CQAAVETVLR 103
                        ****998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.8731107IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIESPE AQGHATVFIA KFFGRAGLMS FISSVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHICQAAVET VLRGGTLRPI NEVLGASLMM  120
MPESADEMSE VITTTQDPTY SRPKVMHIKK KEIIHENVNK IMIHDLDLSL TSGSSSPRKT  180
TKRSTTPSTE ESVTTSLDSG AGVWRDDHYL RRGSGEDNNN NGDQKLLNLF V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525255.12e-90PREDICTED: LOB domain-containing protein 37
SwissprotQ9SZE81e-83LBD39_ARATH; LOB domain-containing protein 39
TrEMBLB9SGY62e-90B9SGY6_RICCO; LOB domain-containing protein, putative
STRINGfgenesh2_kg.7__297__AT4G37540.14e-82(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.17e-78LOB domain-containing protein 39